Predicting splicing from primary sequence with deep learning
In silico tools for splicing defect prediction: a survey from the viewpoint of end users | Genetics in Medicine
MPs | Free Full-Text | What's Wrong in a Jump? Prediction and Validation of Splice Site Variants
Benchmarking deep learning splice prediction tools using functional splice assays - Riepe - 2021 - Human Mutation - Wiley Online Library
Benchmark of splice prediction tools on the LICA-FR dataset. (A)... | Download Scientific Diagram
Quantitative prediction of variant effects on alternative splicing in MAPT using endogenous pre-messenger RNA structure probing | eLife
Frontiers | Splicing in the Diagnosis of Rare Disease: Advances and Challenges
Alamut® Visual 2.15 Documentation: Splicing Module
Frontiers | Computational Tools for Splicing Defect Prediction in Breast/Ovarian Cancer Genes: How Efficient Are They at Predicting RNA Alterations?
Learning the Sequence Determinants of Alternative Splicing from Millions of Random Sequences - ScienceDirect
Aberrant splicing prediction across human tissues | Nature Genetics
varSEAK | JSI medical systems
SpliceAI-visual: a free online tool to improve SpliceAI splicing variant interpretation | Human Genomics | Full Text
Splice-site Strength Estimation: A simple yet powerful approach to analyse RNA splicing | bioRxiv
Cells | Free Full-Text | Machine Learning Approaches for the Prioritization of Genomic Variants Impacting Pre-mRNA Splicing
Improved methods for RNAseq-based alternative splicing analysis | Scientific Reports
Cancers | Free Full-Text | Role of Splicing Regulatory Elements and In Silico Tools Usage in the Identification of Deep Intronic Splicing Variants in Hereditary Breast/Ovarian Cancer Genes
IJMS | Free Full-Text | Computational Methods for Predicting Functions at the mRNA Isoform Level
Detection of aberrant splicing events in RNA-seq data using FRASER | Nature Communications
MMSplice: modular modeling improves the predictions of genetic variant effects on splicing | Genome Biology | Full Text
Spliceator: multi-species splice site prediction using convolutional neural networks | BMC Bioinformatics | Full Text
Prediction of alternative pre-mRNA splicing outcomes | Scientific Reports
SPiP: Splicing Prediction Pipeline, a machine learning tool for massive detection of exonic and intronic variant effects on mRNA splicing - Leman - 2022 - Human Mutation - Wiley Online Library
Cells | Free Full-Text | Machine Learning Approaches for the Prioritization of Genomic Variants Impacting Pre-mRNA Splicing
ORFs, Splicing & Coding
spliceR: an R package for classification of alternative splicing and prediction of coding potential from RNA-seq data | RNA-Seq Blog
